RnoEX0086548 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27453353-27457048:-
Coord C1 exon
chr7:27456953-27457048
Coord A exon
chr7:27455749-27455844
Coord C2 exon
chr7:27453353-27453400
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCCGTCTTGGTTTTCTCAGGCC
3' ss Score
8.81
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
AATGAATGTGAGTGCAAGAAAGGATTTCGAGGAAACGGGATTGACTGTGAACCCATCATATCATGCTTGGAACAAACAGAGAAATGTCACCCCCTG
Seq A exon
GCCACCTGTCAGTCCACTTCCTCTGGTGTTTGGAGCTGTGTTTGCCGAGAGGGCTATGAAGGAAATGGTGTCCTGTGCTACGGCAATGTGCTCATG
Seq C2 exon
GAACTGTCGTTTCTGCCTGAAGCAGCTGTGTTTTACCAGTGGATAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'30-32,'30-31,31-32
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(42.9=46.9),PF129472=EGF_3=PU(27.0=31.2)
A:
PF129472=EGF_3=PD(67.6=78.1)
C2:
PF0246917=Fasciclin=PU(8.0=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAATGTGAGTGCAAGAAAGGA
R:
TTTATCCACTGGTAAAACACAGCTG
Band lengths:
143-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]