GgaEX6002367 @ galGal4
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr1:54965042-54967006:-
Coord C1 exon
chr1:54966911-54967006
Coord A exon
chr1:54966099-54966194
Coord C2 exon
chr1:54965042-54965089
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTCTGGTTCAAAGGCA
3' ss Score
7.53
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
AATGACTGCAAGTGTAAAGATGGATTTAGGGGGAATGGAATTGAATGTACACCCATAAACTCATGCCTGGAACAAAATGGAAAATGCCATCATCTG
Seq A exon
GCAACTTGTCAGCTTGAGCCTTCTTACGGCTGGGAGTGCGTGTGCCCCAAGGGCTATGAAGGAGATGGCAGAATATGCTATGGAAATGCTGCAGAT
Seq C2 exon
GAGTTATCTACTCTACCAGAGGCAACAACATTTAACCAATGGGTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'29-32,'29-31,31-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(44.1=46.9),PF129472=EGF_3=PU(27.0=31.2)
A:
PF129472=EGF_3=PD(67.6=78.1)
C2:
PF0246917=Fasciclin=PU(8.0=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGCAAGTGTAAAGATGGA
R:
ACCCATTGGTTAAATGTTGTTGCC
Band lengths:
138-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]