MmuEX6050450 @ mm9
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86387142-86390657:-
Coord C1 exon
chr10:86390562-86390657
Coord A exon
chr10:86389342-86389437
Coord C2 exon
chr10:86387142-86387189
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCCATCTTGGTTTTCTCAGGCC
3' ss Score
7.48
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AATGAATGTGAATGCAAGAAAGGATTTCGAGGAAACGGAATTGATTGTGAACCTATCATTTCATGCTTGGAACAAATAGAGAAATGTCACCCCCTG
Seq A exon
GCCACCTGTCAATATACTTTGTCTGGTGTTTGGAGCTGTGTTTGCCAAGAGGGCTATGAAGGAAATGGTGTCCTGTGCTATGGAAATGTGCTCATG
Seq C2 exon
GAACTGTCGTTTCTCTCTGAAGCAGCTGTATTTTACCAGTGGATCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'27-30,'27-29,28-30=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(42.9=46.9),PF129472=EGF_3=PU(27.0=31.2)
A:
PF129472=EGF_3=PD(67.6=78.1)
C2:
PF0246917=Fasciclin=PU(8.0=62.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAATGTGAATGCAAGAAAGGA
R:
TTGATCCACTGGTAAAATACAGCTG
Band lengths:
143-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: