HsaEX6068719 @ hg19
Exon Skipping
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:18629]
Coordinates
chr12:104076983-104081993:+
Coord C1 exon
chr12:104076983-104077078
Coord A exon
chr12:104078767-104078862
Coord C2 exon
chr12:104081946-104081993
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTCATCTTGGTTTTCTCAGGCA
3' ss Score
8.25
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AATGAGTGTGAGTGCAAGAAAGGATTTCGAGGAAATGGGATTGACTGTGAACCAATAACTTCATGCTTGGAACAAACCGGGAAATGTCATCCATTG
Seq A exon
GCAAGCTGTCAATCTACTTCGTCTGGTGTCTGGAGCTGTGTTTGTCAAGAGGGCTATGAAGGAGATGGCTTTCTGTGCTATGGAAACGCAGCAGTG
Seq C2 exon
GAATTGTCATTTCTCTCCGAAGCAGCTATATTTAACCGATGGATAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(42.9=46.9),PF129472=EGF_3=PU(27.0=31.2)
A:
PF129472=EGF_3=PD(67.6=78.1)
C2:
PF0246917=Fasciclin=PU(8.0=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGTGTGAGTGCAAGAAAGGA
R:
TTTATCCATCGGTTAAATATAGCTGC
Band lengths:
143-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)