BtaEX0034789 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001887 | STAM2
Description
Bos taurus signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 (STAM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076106]
Coordinates
chr2:44161420-44166620:+
Coord C1 exon
chr2:44161420-44161573
Coord A exon
chr2:44164262-44164431
Coord C2 exon
chr2:44166314-44166620
Length
170 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTCCTTGGTTAACAGACA
3' ss Score
7.96
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAAGCATTCAGAATTGTCTGAATTGAATGTAAAAGTCTTAGAAGCTCTGGAACTTTATAATAAGTTGATGAATGAAGCGCCAGTATATGCAGTCTATTCAAAGATCCACCATCCAGCACATTACCCAACTTCATCAGCTGGAGTTCCAATTCAG
Seq A exon
ACATACCCAGTTCAACCACATGGTGGAAACTATATGGGTCAAAGTATTCACCAAGTCACTGTTGCCCAAAGCTACAGCCTAGGACCAGATCAGATTGGTCCACTGAGATCTCTGCCTCCAACTGTGAATTCCTCAGTGACAACACAGCCTGCTCAAACTCCGTACTTAAG
Seq C2 exon
CACTGGACAAGACACTATTTCCAATCCTACTTACATGAACCAGAACTCTAACCTTCAATCAGCTCCTGGTGCAGCTGCTTACACACAGCAGATGGGGATGTCTGTGGATATGTCATCTTACCAGAACGCTACTTCCAACTTGCCGCAGTTGGCAGGCTTTCCAGTGGCAGTTCCAGCTCATTCAGTTGCACAGCAGCAAACAAATTACCATCAACAGCAGCCTCTCCTTTAAAATCAAACCAAGCATTTTCTTGAAAGCCTTCATAAGTGTACTACTCAACCCTTGTGATTATAATCTGAAAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001887_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.684 C2=0.727
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCATCCAGCACATTACCC
R:
TGCTGCTGTGCAACTGAATGA
Band lengths:
247-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development