HsaEX0062226 @ hg19
Exon Skipping
Gene
ENSG00000115145 | STAM2
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 [Source:HGNC Symbol;Acc:11358]
Coordinates
chr2:152973315-152988682:-
Coord C1 exon
chr2:152988628-152988682
Coord A exon
chr2:152980280-152980449
Coord C2 exon
chr2:152973315-152977316
Length
170 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTCTGATTAATAGACA
3' ss Score
6.9
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATATCTGCCAACAGATGGGTCCAATGATAGATGAAAAACTTGAAGAAATTGATAG
Seq A exon
ACATATCCAGTTCAATCACATGGTGGAAACTATATGGGTCAGAGCATTCACCAAGTAACTGTTGCCCAAAGCTATAGCCTAGGACCCGATCAAATTGGTCCACTGAGATCTCTGCCTCCAAATGTGAATTCCTCAGTGACAGCACAGCCTGCTCAAACTTCATATTTAAG
Seq C2 exon
CACTGGACAAGACACTGTTTCCAATCCTACTTATATGAACCAGAACTCTAACCTACAGTCAGCTACTGGTACAACTGCTTACACACAGCAAATGGGGATGTCTGTGGATATGTCATCTTATCAGAACACTACTTCCAATTTGCCTCAACTGGCAGGCTTTCCGGTGACAGTTCCAGCTCATCCAGTTGCACAGCAGCACACAAATTACCATCAGCAGCCTCTCCTTTAGAAACAAATCAAGCATTTTCTTGAAAGCCTTCATAAGTGTATTATTCAGTCCTTGTGATACCAACCTGAAAATATTAAAACTTTTTTCCCTCTCAACTCAAAAGGACCATGAATAAATAAAGCACAAAAACCTCTCTTATTCTACAAGGCCATAAAAGGTTTTTTTTTTTTTTTTTTTTCAGTCCAGTTTGTTTGAAGTCAATCTTTTCATCAGAGGCAGCTTAAAGATGCTTTCAGTTAGTTTTGTCTTACTTTCAGATTTCTCTACATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115145_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=0.737 C2=0.974
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAGATGGGTCCAATGAT
R:
ATTTGTGTGCTGCTGTGCAAC
Band lengths:
253-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)