DreEX6037523 @ danRer10
Exon Skipping
Gene
ENSDARG00000005318 | stam2
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 [Source:ZFIN;Acc:ZDB-GENE-041114-64]
Coordinates
chr9:38251619-38255352:+
Coord C1 exon
chr9:38251619-38251775
Coord A exon
chr9:38251877-38252019
Coord C2 exon
chr9:38253844-38255352
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTGTGTCTCTCTCAGGGC
3' ss Score
11.81
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GAAGCACTCCGAGTTGTCCGAACTGAATGTGAAGGTCCTGGAAGCTCTTGAGCTGTATAACCAGTTAATGAATGAGGCTCCACTGTACAATGCATACTCCAAAATGCAGTCGCTCCAAGGCACTTACCCAGCAGCCCCTCCTCATCTCTCTATGCAG
Seq A exon
GGCTATCAGCCATCAGGAGCCTACATGTCTGCTGGTGTCCCACAGGGCTATAGTCTCACAGACCAAGCTGGACCACTCTGCTCCATGCCTCCTTCAATCAATTCAGTGGCTCCCAGTCAGCCTGCACAACCATCTTACATCAG
Seq C2 exon
TGGCCCAATGAATGCACCATATGTAAACCAAGCCCCTGGAGGCCCCACCCCTTACCCGCCACAGATGGGTGTGGCTATGGACATGTCAGCCTATCAGAACGCTAATCCTGGTCTGCCTCCCACCTCCTATCCAATGTCAGCTCCGGCCCAACCTGCCCCTCAGCAGCAACAAGCGGCTTTCTACCAGCAGCCCCTTTTATAAGGCTACATGTTTGACTATTCAGCCATAAATTTCCAAGTTTAAATTCCAAACGTTGAAATGAGGCCGAGGGTATTTTTCCTCTCTCATGCATATTGATGTCAAGGGGTATGCAAAGATTTACTGACATATGGCGTCAGCGGACAGACATGTAATCCTCTCGAAAATGCATTTATTTTTTTCCCCTCCCATTTACTAACTCATGAAGCGGTTTAGGGCTGTTGATGGAATCGGTCACAATAATCATAGACAGCATTTTCACCATCTTGTGATAAACACCAGCATATGTGACTCTTTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005318-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.667 C2=0.940
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGAAGCTCTTGAGCTGT
R:
TGGGAGGCAGACCAGGATTAG
Band lengths:
244-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]