GgaEX6043311 @ galGal3
Exon Skipping
Gene
ENSGALG00000012513 | STAM2
Description
NA
Coordinates
chr7:37032187-37035229:-
Coord C1 exon
chr7:37035076-37035229
Coord A exon
chr7:37033393-37033562
Coord C2 exon
chr7:37032187-37032707
Length
170 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTATTATTATTTAGTCG
3' ss Score
5.92
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
AAAACATTCCGAATTATCTGAACTGAATGTGAAAGTTCTAGAAGCTCTGGAGCTCTATAACAAACTGATGAATGAAACACCGATGTATTCAGCCTACTCCAAACTCCATCATCCTGCACAATACCCACCTACATCTTCTGGTGTTTCAGTGCAG
Seq A exon
TCGTATCCTGTACAGCCACCTAGTGGGAACTACATGATCCAAGGTGTTCACCAAGTCACCGTTTCCCAAGGTTACGGCCTAGGACCTGATCAGATGGGGCAGCTCAGGTCTCTGCCTCAAAATATCAATTCTTCTGGAGCAACTCAGCCTGTACAAACTGCTTATTTAAG
Seq C2 exon
CCCAGGACCAGACTCTGTGTTAAACCAGACGTTTGTGACCCAGAGCCCTGGCATTCCTGCAGCTGCCAGCGCAGCAGTGTACAGCCAGCAGCAGATGGGCTCGGTGGATATGGCAGCTTACCAGAGTAACACATCGAGTTTGCATCAAGGACCAGGTTATCCCATGGCAGTTCCTGCTCATTCCGTTCTACAGCAACAAACCAATTACCATCAACAGCCTCTCCTTTAAAAACAGACCAGGCTTGTTTCCAAAATAATGAAGAGAGATTGCTGAATCTAATGGTTTTTATTAATACCTGTCACAGATATCAAAATACATTTTCCTTTAAAATAATCCAATTCAGGGTGATGCTGAATAACAGTATGCATTGGATCTGATTGCTAACCATTTCCTTAATGATACTTTGAATTAGATGAGCTAATGATTTAAAATAATTTCAGATTGCTTTGAGCCCCTGTTCCAGTGGTTTCAAGAAATGCCATTTGTGTGTCTGAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012513-'18-17,'18-16,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=0.593 C2=0.605
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGATGTATTCAGCCTACTCCA
R:
ACTGCCATGGGATAACCTGGT
Band lengths:
247-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]