MmuEX0045263 @ mm10
Exon Skipping
Gene
ENSMUSG00000055371 | Stam2
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 [Source:MGI Symbol;Acc:MGI:1929100]
Coordinates
chr2:52691664-52703252:-
Coord C1 exon
chr2:52703102-52703252
Coord A exon
chr2:52700005-52700171
Coord C2 exon
chr2:52691664-52694937
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCTTTGATTAATAGACA
3' ss Score
7.24
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAAGCATTCAGAACTGTCTGAGTTGAACGTAAAGGTGCTGGAAGCCCTGGACCTGTACAATAAGTTGGTGAATGAAGCGCCTGTGTACTCGGTCTATTCAAAGCTGCATCCCGCACATTACCCACCCGCAGCAGCTGGGGTTCCAGTGCAG
Seq A exon
ACATATCCAGTCCAGTCGCATGGTGGAAACTACCTGGGCCACGGCATTCACCAAGTATCTGTTGCCCAGAACTATAACCTAGGACCTGATCCTATGGGCTCGCTGAGATCTCTGCCTCCAAATATGAACTCGGTAACAGCACACACCGTCCAACCTCCATACTTAAG
Seq C2 exon
CACTGGACAGGACACTGTCTCCAACCCTTCTTACATGAACCAGAGCTCTCGTCTTCAGGCAGCTGCTGGTACAGCTGCTTACACACAGCCTGTGGGGATGTCTACAGATGTGTCTTCTTTCCAGAACACAGCATCCGGTTTGCCTCAGCTGGCTGGCTTTCCAGTGGCAGTTCCTGCACCTGTCGCTGCACAGCCACAAGCAAGCTACCACCAGCAGCCTCTCCTGTAGAGACGCACCAGGACCTGCTGAACGGCTTTGTGGGTGTGCTGTTTAATCTAGGGGATTCTAATCTGAAATATTAAAAGTTTCCCCTCTCAGTCAAAAAGAACCATGAATAAATAAAGCACAAAACCCCACCTTACCCTGAAGGCCATAAAAGGTTTTTTTTTCCAGTCCAGTTGGCTTGAAGTTGACCTTTTGGTCAAAGGCAGCTTGGATGTTCTAAGTTAGTCGGGCTGAACTTTCTGGGCCCTTACTGAGTAGCCTTACGACACTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055371-'23-26,'23-23,26-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.546 C2=0.632
Domain overlap (PFAM):
C1:
PF031279=GAT=PD(41.1=58.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCCCTGGACCTGTACAA
R:
CCGGATGCTGTGTTCTGGAAA
Band lengths:
250-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types