RnoEX0086640 @ rn6
Exon Skipping
Gene
ENSRNOG00000027447 | Stam2
Description
signal transducing adaptor molecule 2 [Source:RGD Symbol;Acc:1311497]
Coordinates
chr3:38230618-38236853:-
Coord C1 exon
chr3:38236703-38236853
Coord A exon
chr3:38233588-38233754
Coord C2 exon
chr3:38230618-38231044
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCTTTGATTAATAGACA
3' ss Score
7.24
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GAGGCACTCAGAGCTGTCGGAGCTGAACGTAAAGGTGCTGGAGGCCCTGGAGCTGTACAACAAATTGGTCAATGAAGCGCCCATGTACTCAGTCTATTCGAAGCTCCACCCGGCTCCTTACTCAGCCACAGCAGCTGGGGTTCCAGTGCAG
Seq A exon
ACATACCCAGTCCAGTCGCATGGTGGGAACTACCTGGGTCATGGCATTCACCAAGTACCTGTTGCCCAGAGCTATAACCTAGGACCTGATCCTATGGGCTCATCGAGGTCTCTGCCTCCAAATATGAACTCAGTAACAGCACACACCATCCAACCTCCATATTTAAG
Seq C2 exon
CACTGGACAGGACGCTGTCTCCAACCCTTCTTACATGACCCAGAGCTCTCATCTTCAGGCAGCTGCTGGGACAGCTGCTTACACACCAGCCATGGGGGTGTCTGCAGACCTGTCCTCTTTCCAGAGCACAGCATCCGGTTTGCCTCAGCTGGCTGGCTTTCCAGTGGCAGTTCCTGTACCTCCAGCCCCACAGCCACAAGCAAGTTACCACCAGCAGCCACTCCTTTAGAGACACACCAGGACCTGCTGAACGGCTTCGTGGGTGTGCCACTTAACCCAGGGGATTCTAATCTGAAATAGTAAAAGTTTCCCCTCTCAGTCAAAAAGAACCATAAGTAAATAAAGCACAAAACCCCACCTTACCCTGAAGGCCATAAAAGGGTTTCTTTTCCAGTCCAGTTTGCTTGAAGCTGATGCTTTGGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027447_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=0.661 C2=0.539
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAACGTAAAGGTGCTGG
R:
TGGAAAGAGGACAGGTCTGCA
Band lengths:
254-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]