BtaEX0035221 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011554 | SURF6
Description
Bos taurus surfeit 6 (SURF6), mRNA. [Source:RefSeq mRNA;Acc:NM_001075529]
Coordinates
chr11:104297237-104299161:-
Coord C1 exon
chr11:104298967-104299161
Coord A exon
chr11:104298330-104298418
Coord C2 exon
chr11:104297237-104297440
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTCTGATCCTTCTTTGCAGATG
3' ss Score
11.82
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTGGAAAAACTCAAGTCTCAGAAGCTGCTGCGCCCCCCAGGAAGAAGAGGAAGAAAGCGCAGAAGAAATCCCGGGAGCGGGAGAGGAAGACTGCAAAGCCCAAGGCCCAGGCCTCTGCGGAGAAGTCTGAGGCCAGGAAGCCAGAGGTGGCCAAGGAGGAGGAGGGAGCCACCAGCTCCACCAGGGTCCCAGCAG
Seq A exon
ATGGCCTGGCCGCAGAGCCTGACTCTTTGTTTGCCTTGGACGTTCTGCGGCAGCGCCTGCATGAGAAGATTCAGGAGGCACGGGGCCAG
Seq C2 exon
GGCAGCGCCAAGGAGCTGTCCGCCGCTGTTTTGGAGAAAAGACGCCGGAGGAAGCAGGAGCGCGACCGGAAAAAGAGGAAACGGAGGGAGCTGAGAGCAAAGGAGAAGGCGGCCAAGGCACTGGAGGGGGCAGAGGCCACCGAGCCGGACCTTCAGGTGCCCAGGGAGGAGGCGCAGGCCCAGCCGGGGCTGCTCTTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011554-'3-5,'3-2,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF049357=SURF6=PU(30.2=95.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGAAGACTGCAAAGCCC
R:
CTTCCTCCGGCGTCTTTTCTC
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development