HsaEX0062974 @ hg19
Exon Skipping
Gene
ENSG00000148296 | SURF6
Description
surfeit 6 [Source:HGNC Symbol;Acc:11478]
Coordinates
chr9:136199384-136201437:-
Coord C1 exon
chr9:136201228-136201437
Coord A exon
chr9:136200554-136200642
Coord C2 exon
chr9:136199384-136199596
Length
89 bp
Sequences
Splice sites
3' ss Seq
TCCTGTCTCCTTCCCTGCAGATG
3' ss Score
13.29
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTGGCAAAACTCAAGGCTCAGAAACTGCAGGGCCCCCAAAAAAGAAAAGGAAGAAAACACAAAAGAAATTCCGGAAGCGAGAAGAGAAGGCTGCTGAGCACAAGGCCAAGTCCTTGGGGGAGAAATCTCCAGCAGCCTCTGGGGCCAGGAGGCCTGAGGCAGCCAAAGAGGAAGCAGCTTGGGCTTCCAGCTCAGCAGGGAACCCTGCAG
Seq A exon
ATGGCCTGGCCACTGAGCCTGAGTCTGTCTTTGCTCTGGATGTTCTGCGACAGCGACTGCATGAGAAGATCCAGGAGGCCCGGGGCCAG
Seq C2 exon
GGCAGTGCCAAGGAGCTGTCCCCTGCCGCCTTGGAGAAAAGGCGGCGGAGAAAGCAGGAACGGGACCGGAAGAAGAGGAAGCGAAAGGAGCTGCGGGCGAAAGAGAAGGCCAGGAAGGCTGAGGAGGCCACGGAGGCCCAGGAGGTGGTGGAGGCAACCCCAGAGGGGGCCTGCACGGAGCCGCGGGAGCCGCCCGGGCTGATCTTCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148296-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0047312=CRF=PU(87.0=66.7)
C2:
PF0047312=CRF=PD(4.3=1.4),PF049357=SURF6=PU(30.9=94.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGCAGCCAAAGAGGAAG
R:
CTTCCTGGCCTTCTCTTTCGC
Band lengths:
174-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)