DreEX0076574 @ danRer10
Exon Skipping
Gene
ENSDARG00000035427 | surf6
Description
surfeit 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1333]
Coordinates
chr5:32674997-32677869:-
Coord C1 exon
chr5:32677666-32677869
Coord A exon
chr5:32677488-32677567
Coord C2 exon
chr5:32674997-32675844
Length
80 bp
Sequences
Splice sites
3' ss Seq
AATTGATTCATCCCTGTTAGGTG
3' ss Score
6.05
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
TTCCATTCAGAGGAGGTGGAAATGATGCAAATGAAGCCGCTCCTTCAAAGAAGAAAAAGAAGAACAAGCAAAAGCAAGTTAAAGGAGATAACGCGAATGCAAACAAAAACAAACCTGTGCCTAAGGGCACTCCAGCTACAACACCTCCAGCTCAAAGGAAAACTGTCCAAAACGGGACTTCAGTAACACAAAACAAGCCTGGAG
Seq A exon
GTGCAGCATCAAAGGACTTTAATGCTGTTGACATTCTTCGCCAGAGGCTTCACCAGAAGATCGAGGAGTCTCGTGGACAG
Seq C2 exon
GGCACGCCGAAAGATCCCTCCTCTGATGAGGTCAAGATGAAACGGGAGAAAAGAAAACAAGAAAGGGAAAGGCGGAAGAGGAAAAGAAAGGAGTTTCGATTGAAAAAGTTAGCAGATGCTGCAGGTTTGCAGCCAGTAGATGTCAAAGAAATAAAGACAGAACCAGAAGAAGACTCTACTGCTACATCGAGCGTGCCTGCCAAAAAGGAGCAGAGCTTTATAGTCTTCAACAAGATGGAGGTTGGAGAAGATTATGTAGACAAAGGAACTAAAATGATGGAGAAGAAGAAAAGGAAGGTGAAAGGAACGCTGACTCCCCTCACTGGCAAGAACTACAAGCAGCTTTTAACACGCATCGAGGCGAGGAAAGCTCACCTGGAGCAGCTTAGGGAGAAGGATGAAGGCAAAGCAAAAAAAGAGGAGGAGAAGATGAAGTGGACCAATGTTCTCTACAAAGCTGAAGGCATGAAGATCAAAGACAATGAGAAACTACTGCACGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035427-'4-7,'4-5,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.809
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF049357=SURF6=WD(100=94.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAAGGGCACTCCAGCTACA
R:
TCCTCTTCCGCCTTTCCCTTT
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]