MmuEX1025191 @ mm10
Exon Skipping
Gene
ENSMUSG00000036160 | Surf6
Description
surfeit gene 6 [Source:MGI Symbol;Acc:MGI:98447]
Coordinates
chr2:26892867-26899932:-
Coord C1 exon
chr2:26899729-26899932
Coord A exon
chr2:26899337-26899425
Coord C2 exon
chr2:26892867-26893067
Length
89 bp
Sequences
Splice sites
3' ss Seq
CTCAGCTTTCTTCCCTGCAGATA
3' ss Score
11.5
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTGTCAGAACAAAAGGCTCAGAAGCTGCTGGCGCCCCCAAAAAGAAAAGGAAGAAAACACAAAAGAAGTCTCCGGAGCAGGAACAGAAAGCTATGGATCACAAGACTAAAGCCCTGGGCAAGAAGCCTCCTACCTCTTCTAGGCCCAAGAACCCAATGGTATCCAAACAAGAGAAGGGCTTGAGCTCCCTGGGGTCCCCTAAAG
Seq A exon
ATAGCCAAGGCACAGCACGGGAGTCTGTCTTTGCACTGGATTTTCTGCGACAGCGGCTGCATGAAAAGATCCAGCTGGCCCGGGGCCAG
Seq C2 exon
GGTAGCACCAAGGAGTTGTCTGCTGCCACTCTCGAGAAAAGACAGCGGAGAAAGCAGGAGAGGGAACGGAAGAAGAGGAAGAGGAAGGAGCGCCAAGCAAAGCAGCAGGTTGCAGAGGCTGAGAAAAAGGAGGAGCCAGTAGAGGTGACCCCCAAAATGGCCTGCAAGGAGCTGCAGGAATCAGGGCTGATCTTTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036160-'5-6,'5-3,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.800 C2=0.806
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF049357=SURF6=PU(29.9=95.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCGGAGCAGGAACAGAAA
R:
GAGAGTGGCAGCAGACAACTC
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types