HsaEX0062974 @ hg38
Exon Skipping
Gene
ENSG00000148296 | SURF6
Description
surfeit 6 [Source:HGNC Symbol;Acc:HGNC:11478]
Coordinates
chr9:133332548-133334601:-
Coord C1 exon
chr9:133334392-133334601
Coord A exon
chr9:133333718-133333806
Coord C2 exon
chr9:133332548-133332760
Length
89 bp
Sequences
Splice sites
3' ss Seq
TCCTGTCTCCTTCCCTGCAGATG
3' ss Score
13.29
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTGGCAAAACTCAAGGCTCAGAAACTGCAGGGCCCCCAAAAAAGAAAAGGAAGAAAACACAAAAGAAATTCCGGAAGCGAGAAGAGAAGGCTGCTGAGCACAAGGCCAAGTCCTTGGGGGAGAAATCTCCAGCAGCCTCTGGGGCCAGGAGGCCTGAGGCAGCCAAAGAGGAAGCAGCTTGGGCTTCCAGCTCAGCAGGGAACCCTGCAG
Seq A exon
ATGGCCTGGCCACTGAGCCTGAGTCTGTCTTTGCTCTGGATGTTCTGCGACAGCGACTGCATGAGAAGATCCAGGAGGCCCGGGGCCAG
Seq C2 exon
GGCAGTGCCAAGGAGCTGTCCCCTGCCGCCTTGGAGAAAAGGCGGCGGAGAAAGCAGGAACGGGACCGGAAGAAGAGGAAGCGAAAGGAGCTGCGGGCGAAAGAGAAGGCCAGGAAGGCTGAGGAGGCCACGGAGGCCCAGGAGGTGGTGGAGGCAACCCCAGAGGGGGCCTGCACGGAGCCGCGGGAGCCGCCCGGGCTGATCTTCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148296-'7-5,'7-2,11-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF049357=SURF6=PU(30.9=94.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGCAGCCAAAGAGGAAG
R:
CTTCCTGGCCTTCTCTTTCGC
Band lengths:
174-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development