GgaEX1056543 @ galGal4
Exon Skipping
Gene
ENSGALG00000003210 | SURF6
Description
surfeit locus protein 6 [Source:RefSeq peptide;Acc:NP_001025853]
Coordinates
chr17:6856076-6858277:-
Coord C1 exon
chr17:6858062-6858277
Coord A exon
chr17:6857379-6857470
Coord C2 exon
chr17:6856076-6856935
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCCTTTCATTTTCAGGTG
3' ss Score
14.18
5' ss Seq
CGGGTACGA
5' ss Score
8.06
Exon sequences
Seq C1 exon
TATCAAAACCAGGCCAGCCAGACGATGCTGGCAGGCAGCTCAAGAAAAAGAAGAGAAGGAAGTCCAGGAAGCAAGCTGAGAAGACAGATTTTCCTGCAGTTAAACAAGGGGTCTCTAAGACCAATAAACTTGCTCCAGGACAGAAAGCAGCCCCACAGGCCAACGAATCGTCTCCACTGGGTGTTAAGCAGAACAAAAATGAGAGTTCCGTTACAG
Seq A exon
GTGCCAAAAGTGAACTTGGTTCCAATTCTTTTTCTGCAATAAATCTGTTGCGTCAGAGACTGCATGAGAAGATTAAAGAAGCTTCTGGGCGG
Seq C2 exon
GATGATACCAAAGAATTACCCCCTTCAGTCCTGGAGAAGAGGCGACGAAGAAAGTATGAAAAAGAGAGAAAGAAGCGAAAAAGAAAGGAGTTGAAGATGAAGGCAAAAGCGGTGAAGGAAGAAACTGAGGAGGTACCTATAGAGCCACAAAGCAAAAAGGAAGAGAGCACAGCTCAGATTGTCTTCAACAGGATCAAAGTGCATGAAGAGAACGAGCTGAACAAGATCCAGAAGAAAAAGGAGAAGAGGAAAGGAGTGAAGGGGAAAATCACTCCTCTGACAGGTAGGAATTACAAGCAGCTGCTGAGCAGGTTGGAGATCCGGAAGAATAAGCTGGAGGAGCTCAAGGAGAAGGACCAGAAGAAAGCTCAGGATCTGGAGATGAAAATGAAATGGACGAATGTTCTGTATAAGGCAGAAGGTGTGAAGATTCATGACGACGAGGAGCGCCTGAAGGAAGCTCTGAAGCGCAAAGAGAAGCGTAAAGCACAGCGCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003210-'2-5,'2-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.797
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF049357=SURF6=WD(100=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGAATCGTCTCCACTGGG
R:
TTCCTTCACCGCTTTTGCCTT
Band lengths:
176-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]