BtaEX0035994 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007271 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr17:54255390-54260599:-
Coord C1 exon
chr17:54260522-54260599
Coord A exon
chr17:54256395-54256475
Coord C2 exon
chr17:54255390-54255501
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTTGTGTTTGTCTAGGTT
3' ss Score
10.04
5' ss Seq
CTGGTAATC
5' ss Score
3.45
Exon sequences
Seq C1 exon
GAATCATGACACAGAGATTTACAGTGAAATTTTTAAGCTATAACAGTGGTAATAAACAGGAATGGTCTGGAAACCCAG
Seq A exon
GTTACCAACTTGGCAAGCCTGTTCGAGCTCTAAGCACCAACGGGACAAATAATGTCACAACTTTACACCTTTGGTATCCTG
Seq C2 exon
CCGGAGGGAGCTTGTGTTCGACAGCAACTCGCAAACCCATTTTATTTGGAGAAAACGTACTATCTGGGTGCCTTTTAGAAGTTGGAATTAATGAAAACTGTACTAAGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007271_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(9.6=100)
A:
PF077736=DUF1619=PD(2.2=21.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCATGACACAGAGATTTACAGTG
R:
AATTCCAACTTCTAAAAGGCACCCA
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development