HsaEX6069899 @ hg38
Exon Skipping
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr12:123695220-123697198:+
Coord C1 exon
chr12:123695220-123695297
Coord A exon
chr12:123696415-123696495
Coord C2 exon
chr12:123697087-123697198
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTTGTGTTTGTCTAGGTT
3' ss Score
9.72
5' ss Seq
CGGGTAATC
5' ss Score
4.59
Exon sequences
Seq C1 exon
GGATAATGACACAGAGATTTGTAGTAAAATTTTTAAGCTATAATAGTGGTAATGAAGAAGAATTATCTGGAAATCCAG
Seq A exon
GTTACCAACTTGGCAAGCCTGTCCGAGCTCTAAATATCAACAGGATGAATAATGTCACGACTTTACATCTTTGGCAATCGG
Seq C2 exon
CTGGAAGGGGTCTGTGTACATCAGCAACTTTCAAACCCATTTTATTTGGAGAAAATGTACTCTCTGGATGCCTGTTAGAAGTCGGGATTAATGAAAATTGTACTCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778-'27-27,'27-25,28-27=AN
Average complexity
A_S
Mappability confidence:
89%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(9.5=100)
A:
PF077736=DUF1619=PD(2.2=21.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTAATGAAGAAGAATTATCTGG
R:
AGCTGAGTACAATTTTCATTAATCCC
Band lengths:
143-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains