HsaEX6069899 @ hg19
Exon Skipping
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:25774]
Coordinates
chr12:124179767-124181745:+
Coord C1 exon
chr12:124179767-124179844
Coord A exon
chr12:124180962-124181042
Coord C2 exon
chr12:124181634-124181745
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTTGTGTTTGTCTAGGTT
3' ss Score
9.72
5' ss Seq
CGGGTAATC
5' ss Score
4.59
Exon sequences
Seq C1 exon
GGATAATGACACAGAGATTTGTAGTAAAATTTTTAAGCTATAATAGTGGTAATGAAGAAGAATTATCTGGAAATCCAG
Seq A exon
GTTACCAACTTGGCAAGCCTGTCCGAGCTCTAAATATCAACAGGATGAATAATGTCACGACTTTACATCTTTGGCAATCGG
Seq C2 exon
CTGGAAGGGGTCTGTGTACATCAGCAACTTTCAAACCCATTTTATTTGGAGAAAATGTACTCTCTGGATGCCTGTTAGAAGTCGGGATTAATGAAAATTGTACTCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(9.5=100)
A:
PF077736=DUF1619=PD(2.2=21.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTAATGAAGAAGAATTATCTGG
R:
AGCTGAGTACAATTTTCATTAATCCC
Band lengths:
143-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)