MmuEX0046777 @ mm9
Exon Skipping
Gene
ENSMUSG00000029386 | Tctn2
Description
tectonic family member 2 [Source:MGI Symbol;Acc:MGI:1915228]
Coordinates
chr5:125066478-125070234:+
Coord C1 exon
chr5:125066478-125066555
Coord A exon
chr5:125069040-125069117
Coord C2 exon
chr5:125070123-125070234
Length
78 bp
Sequences
Splice sites
3' ss Seq
GCTTTGTTGTCCGTGTCTAGGTT
3' ss Score
9.93
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAATGATGACCCAGAGATTCACAGTGAAGTTTTTAAGCCATCACAGTGGTGGTGAGAAGGAATTTTCTGGAAATCCAG
Seq A exon
GTTACCAGCTTGGCAAGCCGGTCCGAGCCCTGCATACCGCTGGGATGAACGTCAGCACACTGCACCTCTGGCAGCCAG
Seq C2 exon
CTGGAAGGGGCCTGTGCACAGCAGCCGCTCTCAGACCCATTTTGTTTGGAGAAAATGCCTTCTCTGGCTGCCTGCTGGAAGTTGGGATTAAGGAGAACTGTACCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029386-'14-13,'14-10,16-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(9.6=100)
A:
PF077736=DUF1619=PD(2.2=22.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGACCCAGAGATTCACAGTG
R:
TTAATCCCAACTTCCAGCAGGC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: