GgaEX0026856 @ galGal4
Exon Skipping
Gene
ENSGALG00000023683 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr15:4926813-4927809:-
Coord C1 exon
chr15:4927732-4927809
Coord A exon
chr15:4927351-4927431
Coord C2 exon
chr15:4926813-4926924
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACAACTCCTTCTGCATTTAGGTT
3' ss Score
9.34
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AAACACTGACACAGAGATTCACAGCTGAATTTGTAAGCTTAAGGAGTGACAGTGCCACAGAAGTGCCTAAGAATCCAG
Seq A exon
GTTATCGAGTTGGAAATGTAGTGAGAGCTGCAAATATGAATGCTTCTGATACTGCTGGCAGCTTAAGAATTTGGCAGCCAG
Seq C2 exon
CTGGCAGAGGTCTGTGCACATCAGCCGCTCACACACCAGTTGTGTTCGGGGTAGATTCGTTCTCTGGATGCATACTGGAAGTTGATGTCAATGAAAACTGCAGCCTTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023683_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(9.7=100)
A:
PF077736=DUF1619=PD(2.2=21.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGACACAGAGATTCACAGC
R:
AGGCTGCAGTTTTCATTGACA
Band lengths:
182-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]