RnoEX0013282 @ rn6
Exon Skipping
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37408162-37411525:-
Coord C1 exon
chr12:37411453-37411525
Coord A exon
chr12:37409499-37409576
Coord C2 exon
chr12:37408162-37408273
Length
78 bp
Sequences
Splice sites
3' ss Seq
GCCTTGTTCTCTGTGTCTAGGTT
3' ss Score
10.93
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
ATGACCCAGAGATTTACAGTGAAGTTTTTAAGCCCTAACAGTGGTGGTGAGAAGGAATTTTCTGGAAATCCAG
Seq A exon
GTTACCAGCTTGGCAAGCCGGTCCGAGCTCTGCATACCGATGGCATGAATGTCACCACGTTGCACCTCTGGCAGCCGG
Seq C2 exon
CTGGAAGGGGCCTGTGCACATCAGCCGCCCTCAGACCTGTTTTGTTTGGAGAAGATGCCTCCTCTGGCTGCCTTTTGGAAGTTGGGATTAAGGAGAACTGTACACAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=PU(77.4=96.0)
A:
PF077736=DUF1619=PD(19.4=22.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCAGAGATTTACAGTGAAGT
R:
ACAGTTCTCCTTAATCCCAACTTCC
Band lengths:
173-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]