BtaEX0035999 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007271 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr17:54272046-54274153:-
Coord C1 exon
chr17:54274046-54274153
Coord A exon
chr17:54273525-54273601
Coord C2 exon
chr17:54272046-54272241
Length
77 bp
Sequences
Splice sites
3' ss Seq
TGTTCCAATCTCTTCTGTAGGTT
3' ss Score
9.8
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
TTTTCATTCCTTCTGTCATCCGCATGTCCGGCTCTGTGGTCAGCGCGTCCCTGGTCGGAGGCACCGAGGATGTGACCGTGTCCCTGACACAGCTGCGGGACGAGATGG
Seq A exon
GTTTATTGCCAGTTCCCACCTGTGGCGAGCTGAACAATGAGACAGGAGACTGGAGTTTGACTGTCACCCCCACTGTG
Seq C2 exon
AATTCGTTGGAAGTGACCGTGAGGTTGAAAAGGGATATGCAGTCATGTTCCTCTAATGGGACAGATCCCTTCCTGGAGGCCCCATGTATTGTCCAAGCTCTTCTTGTTTCAGCCTTTCATAATACATCCTGTTTAGCACATCTGCTCATTCATGTGGAAATTTATGCCAACTCCTCTCTGGGCCAAAATGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007271_MULTIEX2-1/9=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTGTCATCCGCATGTCC
R:
CCTCCAGGAAGGGATCTGTCC
Band lengths:
179-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development