GgaEX1057814 @ galGal4
Exon Skipping
Gene
ENSGALG00000023683 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr15:4931484-4932547:-
Coord C1 exon
chr15:4932434-4932547
Coord A exon
chr15:4931982-4932055
Coord C2 exon
chr15:4931484-4931679
Length
74 bp
Sequences
Splice sites
3' ss Seq
ACATTTTTATTTTGATACAGGAA
3' ss Score
8.86
5' ss Seq
GCGGTACGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
TTTTTCAGCCTTCCTTTATCCACATGTCTGGGCTAAGAGTTAATTCGTTTTTTCTTGGAGATTCTTCAGGAGTTAATTTTTACATTGTTGTAGGTGCTATAGATAAAGACACAG
Seq A exon
GAAATGTGCGAGTTCCAATCTGCAGTGGAAGTGAAAGAGTTGGTGATTGGGATTTGAGTGTAACACCTGATGCG
Seq C2 exon
GGTGCATCCAAAGTGACTGTAACCTTCACTAGAAATCTGCAGTTATGTTTGCCCAATGCCACCGACTGCTGCACAGCGCCTCTCTGTGTGGTGGAAACACTTCAGGTTTTAGCTTGCAGTGGTTCAGTGATGCTGGCACATCTCCTAATTCAAGCTGAAATATATGCCAACTCTTCCTTTACGGGAAATGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023683-'4-4,'4-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACATGTCTGGGCTAAGAGT
R:
CAGCAGTCGGTGGCATTGG
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]