Special

GgaEX1057814 @ galGal4

Exon Skipping

Gene
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr15:4931484-4932547:-
Coord C1 exon
chr15:4932434-4932547
Coord A exon
chr15:4931982-4932055
Coord C2 exon
chr15:4931484-4931679
Length
74 bp
Sequences
Splice sites
3' ss Seq
ACATTTTTATTTTGATACAGGAA
3' ss Score
8.86
5' ss Seq
GCGGTACGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
TTTTTCAGCCTTCCTTTATCCACATGTCTGGGCTAAGAGTTAATTCGTTTTTTCTTGGAGATTCTTCAGGAGTTAATTTTTACATTGTTGTAGGTGCTATAGATAAAGACACAG
Seq A exon
GAAATGTGCGAGTTCCAATCTGCAGTGGAAGTGAAAGAGTTGGTGATTGGGATTTGAGTGTAACACCTGATGCG
Seq C2 exon
GGTGCATCCAAAGTGACTGTAACCTTCACTAGAAATCTGCAGTTATGTTTGCCCAATGCCACCGACTGCTGCACAGCGCCTCTCTGTGTGGTGGAAACACTTCAGGTTTTAGCTTGCAGTGGTTCAGTGATGCTGGCACATCTCCTAATTCAAGCTGAAATATATGCCAACTCTTCCTTTACGGGAAATGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023683-'4-4,'4-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACATGTCTGGGCTAAGAGT
R:
CAGCAGTCGGTGGCATTGG
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]