RnoEX6064240 @ rn6
Exon Skipping
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37423542-37425267:-
Coord C1 exon
chr12:37425160-37425267
Coord A exon
chr12:37424610-37424686
Coord C2 exon
chr12:37423542-37423737
Length
77 bp
Sequences
Splice sites
3' ss Seq
AATTCTAATTTCTCACTTAGGAG
3' ss Score
6.05
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
TTTTCATCCCACCTTTCATCCGGATGTCCAGTCCTGAGGTCCGCGCGTCCCTGGTCGGAGGCAGCGAGGATGTCACCGTGTCACTGACTCCACTGCAAATCAAGGAAG
Seq A exon
GAGTGTTGCCAGTTCCTACTTGTGGTGGCCTCAGGAATGAGACCGGGGATTGGAATCTGACTGTGAGCCCCCAAGCG
Seq C2 exon
AACATGCTGGAAGTGACCGTAAGGTGGAAGAGGGGTCTGGACTGGTGCTCTCCAGATGAGACAGCCTCGTTCTCAGAGGCCCCATGCATCGTGCAGACTCTGCTGGTCTCAGCATCCCACAATGCATCCTGCTTAGCACATCTGCTCATCCAGGTGGAGATTTATCCCAACACGTCTGTGACCCACAATGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCCACCTTTCATCCGGA
R:
AACGAGGCTGTCTCATCTGGA
Band lengths:
176-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]