HsaEX6069903 @ hg19
Exon Skipping
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:25774]
Coordinates
chr12:124156054-124158357:+
Coord C1 exon
chr12:124156054-124156161
Coord A exon
chr12:124156603-124156679
Coord C2 exon
chr12:124158165-124158357
Length
77 bp
Sequences
Splice sites
3' ss Seq
TGCTGGTCTTCTTTCTTTAGGAA
3' ss Score
10.76
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
Exon sequences
Seq C1 exon
CTTTCATCCCTCCTTTTATCCGAATGTCCGGCCCTGCGGTCAGCGCGTCCCTGGTCGGAGACACCGAGGGTGTGACCGTGTCCCTGGCAGTGCTGCAGGACGAGGCGG
Seq A exon
GAATATTGCCAATTCCGACGTGTGGAGTGCTGAACAATGAGACGGAAGACTGGAGCGTGACTGTGATCCCCGGTGCG
Seq C2 exon
GTGTTGGAAGTGACAGTGAGGTGGAAGAGAGGTCTGGACTGGTGTTCCTCCAATGAGACAGATTCCTTCTCAGAGTCCCCCTGTATCCTCCAGACCCTTCTGGTTTCAGCATCTCATAATTCATCCTGTTCAGCACATCTACTCATTCAAGTGGAAATTTATGCCAACTCTTCTCTGACCCATAATGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778-'1-3,'1-1,2-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCTTTTATCCGAATGTCCG
R:
AGGGGGACTCTGAGAAGGAAT
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)