DreEX0077912 @ danRer10
Exon Skipping
Gene
ENSDARG00000035633 | tctn2
Description
tectonic family member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-751]
Coordinates
chr5:12898009-12906758:+
Coord C1 exon
chr5:12898009-12898122
Coord A exon
chr5:12900953-12901026
Coord C2 exon
chr5:12906557-12906758
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTATTGTGAATCTTTCCAGGTA
3' ss Score
8.45
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TGTTTCAGCCTGCGTTCATTCAGGCATCTGGTCCAAAAATATCATCTTTTCTGGTTGGAAACGTGTCGGGCATTTCATTCAGTCTTAGTGCTGTTTCTTCGTCAAATGCAACAG
Seq A exon
GTAGCATCCTTCCACCATCCTGTTTGCCGGTTTATCAACCACAGTGGAATCTTTCCTATGAATTAATTGGGAAG
Seq C2 exon
AATGCCTTTCTGGTGCACGTGAGTCTGAACCGCAGTCTCCAGCTGTGTGGGAATGAAACCTCCATCTCGGACTGCTGTCTGGAGTTGCTTTGTGTCCAGGAGACTCTGCTTGTGTCTGCTTGTGTGGATGAAACACCTAAAGCCTCCCTCATCATACAGACCCAGATTTATGCCCAGATCCACCCCAGTAAACCTCCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035633_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0248011=Herpes_gE=PU(76.9=88.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTCGGGCATTTCATTCA
R:
GCAGACACAAGCAGAGTCTCC
Band lengths:
173-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]