MmuEX6021020 @ mm10
Exon Skipping
Gene
ENSMUSG00000029386 | Tctn2
Description
tectonic family member 2 [Source:MGI Symbol;Acc:MGI:1915228]
Coordinates
chr5:124598749-124602080:+
Coord C1 exon
chr5:124598749-124599242
Coord A exon
chr5:124599707-124599783
Coord C2 exon
chr5:124602015-124602080
Length
77 bp
Sequences
Splice sites
3' ss Seq
AATTCTAATTTCTCGCTTAGGAG
3' ss Score
5.65
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TCATTGATTGGTGGTTGCCATGGCTGCAGGCATTTAGCTTGGCAATATGGCGTCGGCTGGTCGGCGAAGGCCGCCACTTTTTCTCTTCCAGGCTATTCTGGGTTTCTGAGGCAGGCCGGCCCGGGTATGGGCTCTCTGTCACCGCTCAGCCTCCTGTGGGGACTCCTCCTGCTGCAGGGCGTCCTGAGGCCGCTGCGCGGGGACCCGGGTGTGTATGGTGAGGGTATGGCCAGCATGGCCCAGGCTGAGGGAATCTGGCTCTTAAAGGGCCAGACCTGGGGTTCCTAGGATCCCGGAAGCCAGGCCACATAAAAAACCAGCACACGCACCCCAGGTACAGGTTCTGTACCCGTTAACCCCTCCCCGCACATCCTTCCTTCCCTCAGTTTTCATCCCACCTTTCATCCGGATGTCCAGCCCTGAGGTCCGAGCGACCCTGGTCGGAGGCAGCGAGGATGTCGCTGTGTCTCTGAGTCTGCTGCAGGTCGAGGAAG
Seq A exon
GAGTGTTGCCAGTTCCTACTTGTGGCGGCCGCCGCAATGAGACAGTGGATTGGAATGTGACTGTGAGCCCCCGAGAG
Seq C2 exon
AGCACGCTGGAAGTGACCATAAGGTGGAAGAGGGGTCTAGACTGGTGCTCCGCAGACGAGACAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029386-'1-12,'1-1,3-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTACCCGTTAACCCCTCC
R:
TTATGGTCACTTCCAGCGTGC
Band lengths:
174-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types