BtaEX0036420 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017839 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:3682533-3693103:+
Coord C1 exon
chr1:3682533-3682658
Coord A exon
chr1:3688089-3688197
Coord C2 exon
chr1:3692924-3693103
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCTCACTGTGTCCAGAAA
3' ss Score
7.29
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CTTGATGTGCTCTTTGGAAATTTAACCGAAATGGTAGAGTTTCAAGTAGAATTCCTTAAAACTCTGGAAGATGGAGTGAGATTGGTACCTGATTTGGAAAAGCTTGAGAAAGTTGATCAATTTAAG
Seq A exon
AAAGTGCTGTTCTCTCTGGGGGGATCCTTTCTGTATTACGCTGACCGCTTCAAGCTCTACAGTGCCTTCTGCGCCAGCCACACGAAGGTCCCCAAGGTCCTGGTGAAAG
Seq C2 exon
CCAAGACGGACGCAGCTTTCAAGGCGTTCCTGGACGCCCAGAACCCAAAGCAGCAGCATTCGTCCACCCTGGAGTCCTACCTCATCAAGCCCATCCAGAGGATCCTTAAGTATCCGCTTCTGCTGAAGGAGCTTTTTGCTCTGACGGACGCGGAGAGTGAGGAACACTACCACCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017839_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(21.6=100)
A:
PF0062115=RhoGEF=FE(18.9=100)
C2:
PF0062115=RhoGEF=FE(31.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAAGATGGAGTGAGATTGGT
R:
TCCAGGTGGTAGTGTTCCTCA
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development