MmuEX0047308 @ mm10
Exon Skipping
Gene
ENSMUSG00000002489 | Tiam1
Description
T cell lymphoma invasion and metastasis 1 [Source:MGI Symbol;Acc:MGI:103306]
Coordinates
chr16:89805083-89811595:-
Coord C1 exon
chr16:89811470-89811595
Coord A exon
chr16:89809368-89809476
Coord C2 exon
chr16:89805083-89805262
Length
109 bp
Sequences
Splice sites
3' ss Seq
ACTTCTTCTCTTTAATCTAGAAA
3' ss Score
8.68
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CTTGATGTACTTTTTGGAAATTTAACCGAAATGGTGGAGTTTCAAGTCGAGTTCCTTAAGACTCTAGAAGATGGAGTAAGACTGGTCCCTGACTTGGAAAAGCTGGAGAAGGTTGACCAGTTCAAG
Seq A exon
AAAGTGCTCTTCTCTCTGGGGGGATCCTTCCTGTACTACGCGGACCGCTTCAAGCTCTACAGTGCCTTCTGTGCGAGCCACACAAAAGTCCCCAAGGTCCTGGTGAAAG
Seq C2 exon
CCAAGACGGACACAGCCTTCAAGGCGTTCCTCGATGCCCAGAACCCGAGGCAGCAGCACTCATCCACGCTGGAGTCTTACCTCATCAAGCCCATCCAGAGGGTCCTCAAGTACCCGCTTCTGCTCAGGGAGCTGTTTGCGCTGACCGATGCGGAGAGCGAGGAACACTACCACCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002489-'70-37,'70-34,71-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(21.6=100)
A:
PF0062115=RhoGEF=FE(18.9=100)
C2:
PF0062115=RhoGEF=FE(31.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGAGTTTCAAGTCGAGT
R:
ATCGGTCAGCGCAAACAGC
Band lengths:
244-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types