GgaEX1058491 @ galGal3
Exon Skipping
Gene
ENSGALG00000015842 | TIAM1
Description
NA
Coordinates
chr1:107927985-107932684:-
Coord C1 exon
chr1:107932559-107932684
Coord A exon
chr1:107930310-107930418
Coord C2 exon
chr1:107927985-107928164
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTTTAAATCCTAGAAA
3' ss Score
8.3
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTGGATGTTCTCTTCGGGAATCTGACTGAAATGGTAGCATTTCAGGTAGAGTTCCTGAAAACTCTTGAAGATGGAGTAAGGCTGGTTCCAGATCTGGAAAAGCTTGAAAAAGTTGAGCAATTTAAG
Seq A exon
AAAGTGCTGTTTTCCTTGGGTGGATCCTTCCTTTACTACGCCGACCGTTTCAAGCTGTACAGTGCCTTCTGTGCCAGCCACACGAAAGTCCCAAAAGTACTGGTGAAAG
Seq C2 exon
CCAAGACAGACACTGCTTTCAAGGCATTTCTGGATGCTCAGAATCCCAGGCGGCAGCACTCCTCCACTCTGGAGTCTTACCTCATCAAACCCATCCAGAGGATACTGAAATACCCCCTCCTGCTGAAGGAGCTCTTTGCTCTGACTGATGTAGACAGTGAAGAACATTATCACCTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842-'22-27,'22-26,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(21.6=100)
A:
PF0062115=RhoGEF=FE(18.9=100)
C2:
PF0062115=RhoGEF=FE(31.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGTTCTCTTCGGGAATCTG
R:
AGCAGGAGGGGGTATTTCAGT
Band lengths:
249-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]