DreEX0078827 @ danRer10
Exon Skipping
Gene
ENSDARG00000078430 | tiam1a
Description
T-cell lymphoma invasion and metastasis 1a [Source:ZFIN;Acc:ZDB-GENE-080325-1]
Coordinates
chr10:25620228-25621263:-
Coord C1 exon
chr10:25621138-25621263
Coord A exon
chr10:25620888-25620996
Coord C2 exon
chr10:25620228-25620407
Length
109 bp
Sequences
Splice sites
3' ss Seq
CATTCTTATTAAACCTTCAGAAA
3' ss Score
6.2
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTGGACGTGCTGTTTGGAAACTTGGCGGAGATGGTGGAATTCCAAGTGGAGTTTCTAAAAACTCTAGAAGATGGAACCAGATTAGTTCCAGATTTAGACAAACTGGAGAGAGTCGATCAGTTCAAG
Seq A exon
AAAGTTCTGTTTTCTCTTGGCGGATCTTTCCTCTACTATGCGGACCGTTTTAAGATCTACAGTGCATTTTGTGCCAGTCACACAAAAGTCCCCAAGGTCCTTACCAAAG
Seq C2 exon
CTAAAACAGACCCAGAGTTCAAGGCATTTCTGGCTGAGAGGAACCCCAGACAGCAGCATTCCTCCACGCTGGAGTCCTACCTGATCAAACCTATTCAGAGAGTCCTAAAATACCCACTGCTCCTGAGGGAGCTTTACTCGCTCACCGACCCCGACAGCGAGGAGCACTACCACCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078430-'22-23,'22-22,23-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0391712=GSH_synth_ATP=PD(17.2=52.4),PF0062115=RhoGEF=FE(23.4=100)
A:
PF0062115=RhoGEF=FE(18.9=100)
C2:
PF0062115=RhoGEF=PD(33.7=96.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAAACTTGGCGGAGATGG
R:
CCCTCAGGAGCAGTGGGTATT
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]