RnoEX6056487 @ rn6
Exon Skipping
Gene
ENSRNOG00000021569 | Tiam1
Description
T-cell lymphoma invasion and metastasis 1 [Source:RGD Symbol;Acc:1307455]
Coordinates
chr11:29950365-29957137:-
Coord C1 exon
chr11:29957012-29957137
Coord A exon
chr11:29954621-29954729
Coord C2 exon
chr11:29950365-29950544
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATGTTCTCTCTTTGATCTAGAAA
3' ss Score
9.09
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CTCGATGTACTCTTTGGAAATTTAACCGAAATGGTGGAGTTTCAAGTTGAGTTCCTTAAAACTCTAGAAGATGGAGTTAGACTGGTCCCTGACTTGGAAAAGCTTGAGAAGGTTGACCAGTTTAAG
Seq A exon
AAAGTGCTGTTCTCTCTGGGGGGATCCTTCCTGTACTACGCGGACCGCTTCAAGCTCTACAGTGCCTTCTGTGCGAGCCATACGAAAGTCCCCAAGGTCCTGGTGAAAG
Seq C2 exon
CCAAGACGGACACAGCCTTCAAGGCATTCCTAGATGCCCAGAACCCGAGGCAGCAGCACTCGTCCACACTAGAGTCTTACCTCATCAAGCCCATCCAGAGGGTCCTCAAGTACCCGCTTCTGCTCAGGGAGCTGTTTGCGCTGACCGACGCGGAGAGTGAGGAGCATTACCACCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021569-'38-34,'38-33,40-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(21.6=100)
A:
PF0062115=RhoGEF=FE(18.9=100)
C2:
PF0062115=RhoGEF=FE(31.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAATGGTGGAGTTTCAAGT
R:
GCGCAAACAGCTCCCTGAG
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]