BtaEX0037543 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010497 | TRAF2
Description
TNF receptor-associated factor 2 [Source:HGNC Symbol;Acc:HGNC:12032]
Coordinates
chr11:106298272-106301214:-
Coord C1 exon
chr11:106300687-106301214
Coord A exon
chr11:106299869-106299943
Coord C2 exon
chr11:106298272-106298598
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTTGACTCCAGGCCCGTCAGTTT
3' ss Score
-4.26
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CCTTGACGTGCGACGGCTGCGGCAAGAAGAAGATCGCCCGTGAGAAGGTGGGTGCTCTGGGCCAGAGTGGGCTCCATGTCTCTCCCGCCCCCCCACCCCCCAAGGCACTGCCCGGTGTCTGCGCCCTTGGCCCGCGTGGGCGGGGACCTGGCGCTTGGGTGTTCCACGCTGTGTCGGGGCTCCCAGTTTGCTGGGGGTCTCTGTCTCTGAGGGTGGGGCGGGGCAGGGTGGGCAGCAGCTCTCGTCTGCTCCCGCAGCACGTGGTCTCACGGGCCCCTCTCACGTCCCTGCTGGCTGTGTGGGGATCTGACCTGTGTGGCCGGCTATCTCTCCAGCCCTCCAGCTCTTGGGGGAGGATGAGAGCCCTGTGGCCTGTTTTTGGGGAGGCAGCAGTGGTGCGTCTGACAGAGTCCGTCTGTCTTCTTTTCCTTTGAGTGTCTGGGGTCGCTCTGTAGAGAGAACTCGTTTGTGGCTGTGTTGAGCCGTCACGGTGCTCCAGG
Seq A exon
TTTCAGGACCACGTCCGGGCGTGTGGCAGATGCCGAGTCCCATGCCGATTCCACGCTGTTGGCTGCCCCGAGATG
Seq C2 exon
GTGGAGAGCGAGCAGCAGCCGGAGCACGAGGCGCAGCGGCTCCAGGAGCACCTGGCCCTGCTGCTGGGCGTCCTGCTGGAGGCTGGGCGGCCCCCGGGGGACAGCCGCCTGCTCCTCAGGCCAGGCGAGGGCGCCTTGGAGGCCGGCACACCCTCCAGGGTGGCGGAGCTGCTGCAGAGGTGCGAGGCCCTGGAGCGGAAGACAGCCACCTTCGAGAACATCGTCTGTGTGCTGAACCGGGAGGTGGAGCGGGTGGCCGTGACGGCTGAGGCCTGCGGCCGGCAGCACCGGCTGGACCAAGACAGGATCGAGGCCCTGAGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010497_MULTIEX1-1/5=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PD(0.1=0.0),PF0217613=zf-TRAF=PU(39.7=92.0)
A:
PF0217613=zf-TRAF=FE(41.4=100)
C2:
PF0217613=zf-TRAF=PD(13.8=7.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGGGGGAGGATGAGAGC
R:
CTGCTGCTCGCTCTCCAC
Band lengths:
175-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development