DreEX0080952 @ danRer10
Exon Skipping
Gene
ENSDARG00000030173 | traf2a
Description
Tnf receptor-associated factor 2a [Source:ZFIN;Acc:ZDB-GENE-071120-2]
Coordinates
chr5:28158907-28161960:-
Coord C1 exon
chr5:28161886-28161960
Coord A exon
chr5:28161707-28161781
Coord C2 exon
chr5:28158907-28159410
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATAAATATTTCTTTCTACAGTAT
3' ss Score
6.53
5' ss Seq
ACGGTAGGC
5' ss Score
8.81
Exon sequences
Seq C1 exon
GCCCATGATGAGATCTGCCCTAAATACCCAATGATTTGTGAAGGCTGTGCCAAGAAAAAAATTCCCAGAGAGAAA
Seq A exon
TATGTGGACCACATTAAACTGTGCACCAAATTCAGAACACCCTGCAGATTTCATGTTGTCGGCTGTGATATGACG
Seq C2 exon
GTGGAGAAGGAGAAGATCCACGATCACGAACAAGCCTGTTCCTACGAGCACTTAAACCTCCTCCTGCACTTCATCATGGGCATCAAGGTGAACTTGGAGAGTCTGCAGCCTCAGAGTCTGGAGCTGGCCAGCCATAAGATCCACGAGCTGCATCAGTCTCTGCGGGAGCTGGAGCTCAAGATGGGCCAGCTGTGTGGAGCAGGGGCTTCCGTGCAGGGGGCCTGTGCACTGCCGCCGCCACCACCGCCAGCTCCGACGCTGGGTACGTCTTTCACCCCTTTACCTACTGCCGTCGGTGCAGCTTTGGAGTTGCAGCTGCACAGTGAGAAAACCAAAGTGGTGGAGCTCAGCCGTCGCTGTCAGGAGCTGGAGCTGAAAGTTAATACCTTTGAGAACATCGTCTGCGTGCTTAACCGTGAGATGGAGCGCTCCGCTACTACCATGGAGGCGTATAATCGTCAACATCGGCTTGACCAGGACAAGATTGAGATACTCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030173-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PU(39.7=92.0)
A:
PF0217613=zf-TRAF=FE(41.4=100)
C2:
PF0217613=zf-TRAF=PD(13.8=4.8),PF086146=ATG16=PU(86.6=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATGATGAGATCTGCCCT
R:
TGCAGACTCTCCAAGTTCACC
Band lengths:
182-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]