GgaEX6014692 @ galGal4
Exon Skipping
Gene
ENSGALG00000009014 | TRAF2
Description
TRAF2 protein [Source:UniProtKB/TrEMBL;Acc:E1BTY1]
Coordinates
chr17:535795-537798:-
Coord C1 exon
chr17:537724-537798
Coord A exon
chr17:536863-536937
Coord C2 exon
chr17:535795-536154
Length
75 bp
Sequences
Splice sites
3' ss Seq
AACGTTATCTTCTTTTCTAGTTT
3' ss Score
8.97
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GCTCACGACGAGGTCTGCCCAAAATTTCCATTGACTTGTGATGGCTGCGGGAAGAAGAAGATCCCCAGAGAGAAG
Seq A exon
TTTCAGGACCACGTGAAGAACTGCGGCAAATGCAAAGTGCCTTGCAGATTCAAGGTTGTCGGCTGTGCTGAGATG
Seq C2 exon
GTGGAAAATGAAAAGCTACCAGAACACGAAAGCAAGTGCCTGGCAGAGCATCTATACATGCTGCTGAGTTTTGTGCTCAGCCTCAAGAGTGGATCTGGAGACCTGAAGCACCTTCCTGCCATTCCCTCATCACAGAGCAGCTCCCCGCTGCTGGCAGCAAACTCCCTGTGCCCGGAGTCGGAGCTCTTCAAATCCCTGGAGCTCTTGGGAAGGTGTGACGCCCTGGAGAAGAAAACAGTGACCTTTGAGAACATCGTCTGCGTGCTCAATAGAGAGGTAGAAAGGGTATCTCTGACAGCTGAAGCGTACAGCCGGCAGCATCGATTAGACCAGGAGCAGATCGAGACGCTGAGTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009014-'6-10,'6-7,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PU(39.7=92.0)
A:
PF0217613=zf-TRAF=FE(41.4=100)
C2:
PF0217613=zf-TRAF=PD(13.8=6.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCGGGAAGAAGAAGATCC
R:
GCTCTGTGATGAGGGAATGGC
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]