HsaEX0066798 @ hg19
Exon Skipping
Gene
ENSG00000127191 | TRAF2
Description
TNF receptor-associated factor 2 [Source:HGNC Symbol;Acc:12032]
Coordinates
chr9:139804372-139814967:+
Coord C1 exon
chr9:139804372-139804446
Coord A exon
chr9:139810993-139811067
Coord C2 exon
chr9:139814686-139814967
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTGACGTCACTCCCTTGTAGTTT
3' ss Score
5.69
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GCGCACCACGAGGTCTGCCCCAAGTTCCCCTTAACTTGTGACGGCTGCGGCAAGAAGAAGATCCCCCGGGAGAAG
Seq A exon
TTTCAGGACCACGTCAAGACTTGTGGCAAGTGTCGAGTCCCTTGCAGATTCCACGCCATCGGCTGCCTCGAGACG
Seq C2 exon
GTAGAGGGTGAGAAACAGCAGGAGCACGAGGTGCAGTGGCTGCGGGAGCACCTGGCCATGCTACTGAGCTCGGTGCTGGAGGCAAAGCCCCTCTTGGGAGACCAGAGCCACGCGGGGTCAGAGCTCCTGCAGAGGTGCGAGAGCCTGGAGAAGAAGACGGCCACTTTTGAGAACATTGTCTGCGTCCTGAACCGGGAGGTGGAGAGGGTGGCCATGACTGCCGAGGCCTGCAGCCGGCAGCACCGGCTGGACCAAGACAAGATTGAAGCCCTGAGTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127191_MULTIEX2-4/7=3-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PD(0.1=0.0),PF0217613=zf-TRAF=PU(39.7=92.0)
A:
PF0217613=zf-TRAF=FE(41.4=100),PF045827=Reo_sigmaC=PU(2.9=16.0)
C2:
PF0217613=zf-TRAF=PD(13.8=8.5),PF045827=Reo_sigmaC=FE(67.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCCCAAGTTCCCCTTAA
R:
TGGCTCTGGTCTCCCAAGAG
Band lengths:
172-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)