RnoEX0093179 @ rn6
Exon Skipping
Gene
ENSRNOG00000006238 | Traf2
Description
Tnf receptor-associated factor 2 [Source:RGD Symbol;Acc:1310457]
Coordinates
chr3:2751143-2754376:-
Coord C1 exon
chr3:2754305-2754376
Coord A exon
chr3:2753585-2753659
Coord C2 exon
chr3:2751143-2751415
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCGTCCTCCTTGCCCTCCAGCTT
3' ss Score
7.93
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CTACACTACGAGGTCTGCCCCAAGTTTCCCTTAACCTGTGATGGCTGTGGCAAGAAGATCTCTCAGGAGAAG
Seq A exon
CTTCAGGACCATGTCAGAACGTGCAGTAAGTGCCGGGTCCTCTGCAGGTTCCACGCCATCGGCTGCTCGGAGCTG
Seq C2 exon
GTGGAGACTGAGGACCTGCAGGACCACGAGCTGCAGCGTCTACGGGAACATCTGGCCCTACTGCTGAGCTCGTTCCTGGAGTCCCAAGCCTCACAGAACCAGGTGGGGCCAGAGCTGTTACAGCGGTGCCAGATTTTGGAGCAGAAGATAGCCACCTTTGAGAACATTGTCTGCGTTTTGAACCGGGAGGTAGAGAGGGTAGCAGTGACTGCAGAGGCTTGTAGCCGGCAGCACCGTCTGGACCAGGACAAGATTGAGGCCCTAAGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006238_MULTIEX1-6/7=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PD(0.1=0.0),PF0217613=zf-TRAF=PU(38.6=91.7)
A:
PF0217613=zf-TRAF=FE(42.1=100)
C2:
PF0217613=zf-TRAF=PD(14.0=8.8),PF045827=Reo_sigmaC=PU(69.5=97.8),PF140731=Cep57_CLD=PU(69.4=74.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAACCTGTGATGGCTGTGGC
R:
AATCTGGCACCGCTGTAACAG
Band lengths:
177-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]