DreEX0080957 @ danRer10
Exon Skipping
Gene
ENSDARG00000101036 | traf2b
Description
Tnf receptor-associated factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5345]
Coordinates
chr5:53793175-53799736:+
Coord C1 exon
chr5:53793175-53793249
Coord A exon
chr5:53795448-53795522
Coord C2 exon
chr5:53799395-53799736
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTACTTTTTTGCAGTTT
3' ss Score
9.57
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCCCATGATGAAATTTGTCAGAAATTTCCCATGCAATGCAAAGACTGTGGTAAAAAGAAAATACCCAGAGAGAAG
Seq A exon
TTTCAAGAGCACACCAAATCTTGTGCAAAATCTAAGTCAGCATGCCAGTTCAGAGAGATTGGTTGCAGGGCAGTG
Seq C2 exon
GTTGACAATTGCAAGCAACAGGAGCATGAGCAGACCAGCATAATGGAGCATTTGCGTCTGATGTTAGCTTTGCTATCCTCCATGCGCCTGCGAGCAGAAGGGGCTGGAGAGTGGCAGGAAGACGTTGGGCTGGGATTGTATCGCGGACCTGAAGATGCACCACCAGCAGGAGCTCATAATGTAGGAAGAGGAGGCGGTCCTGGTGTTCAGAAAAAAGTCACAACTTTGGAGAACATAGTGTGTGTCTTGAATAAAGAGGTGGAACGCTCTGCCCTCACCATGGAGGCGATATCCCGGCAACATCGCCTGGACCAGGAAAAAATTGAGAATTTGTCAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101036-'7-6,'7-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.225
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PU(39.7=92.0)
A:
PF0217613=zf-TRAF=FE(41.4=100)
C2:
PF0217613=zf-TRAF=PD(13.8=7.0),PF115593=ADIP=PU(69.5=57.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCAATGCAAAGACTGTGG
R:
CAACGTCTTCCTGCCACTCTC
Band lengths:
174-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]