MmuEX0048687 @ mm9
Exon Skipping
Gene
ENSMUSG00000026942 | Traf2
Description
TNF receptor-associated factor 2 [Source:MGI Symbol;Acc:MGI:101835]
Coordinates
chr2:25380387-25383826:-
Coord C1 exon
chr2:25383752-25383826
Coord A exon
chr2:25382994-25383068
Coord C2 exon
chr2:25380387-25380668
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCATTCTTCTTACCTTCCAGTTT
3' ss Score
9.81
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTACACTATGAGGTCTGCCCCAAGTTTCCCTTAACCTGTGATGGCTGTGGCAAGAAGAAGATCCCTCGGGAGACG
Seq A exon
TTTCAGGACCATGTTAGAGCATGCAGCAAATGCCGGGTTCTCTGCAGATTCCACACCGTTGGCTGTTCAGAGATG
Seq C2 exon
GTGGAGACTGAGAACCTGCAGGATCATGAGCTGCAGCGGCTACGGGAACACCTAGCCCTACTGCTGAGCTCATTCTTGGAGGCCCAAGCCTCTCCAGGAACCTTGAACCAGGTGGGGCCAGAGCTACTCCAGCGGTGCCAGATTTTGGAGCAGAAGATAGCAACCTTTGAGAACATTGTCTGCGTCTTGAACCGTGAAGTAGAGAGGGTAGCAGTGACTGCAGAGGCTTGTAGCCGGCAGCACCGGCTAGACCAGGACAAGATTGAGGCCCTGAGTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026942-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PD(0.1=0.0),PF0217613=zf-TRAF=PU(39.7=92.0)
A:
PF0217613=zf-TRAF=FE(41.4=100)
C2:
PF0217613=zf-TRAF=PD(13.8=8.5),PF045827=Reo_sigmaC=PU(69.5=94.7),PF140731=Cep57_CLD=PU(67.0=64.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTATGAGGTCTGCCCCAA
R:
TCAAGGTTCCTGGAGAGGCTT
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: