BtaEX0038124 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033010 | TTC27
Description
tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:HGNC:25986]
Coordinates
chr11:15209500-15219171:+
Coord C1 exon
chr11:15209500-15209677
Coord A exon
chr11:15212358-15212487
Coord C2 exon
chr11:15219031-15219171
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTCTTTATTCTTATATGCAGACA
3' ss Score
7.56
5' ss Seq
GAGGTACGC
5' ss Score
9.4
Exon sequences
Seq C1 exon
AGAGTGGATCTTTCCTACAATTGTTGCTAGAAGGGAACTACAAAGCCATATTGTTAAATTCATTGACTCAAAGTATTTTAAATTCAGCAACAATAACTGAAGAAAAGATTGACAGCTACCTAGAGAAGCAGATAGTAACATTCCTGGATGATTCAGCAGAATTGGACAAAATCAGAAG
Seq A exon
ACAACAGAAGATACTCCTACTTGGTGTAAGCAGTTTGCAACTTTTTGTTCAGAGTAACTGGACGGGCCCTCTTGTTGATTTACACCCTCAGGATTTTTTGCCATCTGTTTTGTTTCAGCAGTTCAGTGAG
Seq C2 exon
ATCAAAGCGCTGGATGCGTTTCTTCTGAGTCTGCTCGTTCTAGATGGTGAATCAATCTACAGCCTGACCACAAAGCCTATCCTGCTGTTATTAGCAAGAATTATCTTAGTGAATATAAGACATAAACTGACAGCTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033010-'2-5,'2-4,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAGAAGGGAACTACAAAGCC
R:
ACAGCAGGATAGGCTTTGTGG
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development