HsaEX0067886 @ hg38
Exon Skipping
Gene
ENSG00000018699 | TTC27
Description
tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:HGNC:25986]
Coordinates
chr2:32630523-32640410:+
Coord C1 exon
chr2:32630523-32630700
Coord A exon
chr2:32633876-32634005
Coord C2 exon
chr2:32640270-32640410
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTAACCATTCTTATATGCAGACA
3' ss Score
6.46
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
AGAGTGGATCTTTCCTACAATTGCTACTGGAAGGGAACTATGAAGCCATATTCTTAAATTCAATGACTCAAAATATTTTTAATTCAACAACAACCGCTGAAGAAAAGATTGATAGCTACCTGGAGAAGCAGGTAGTAACATTCCTGGATTACTCAACAGATTTGGACACAACGGAAAG
Seq A exon
ACAACAGTTGATATTTCTACTTGGTGTGAGCAGTTTGCAACTTTTTGTTCAGAGCAACTGGACGGGGCCCCCTGTTGACTTACACCCTCAGGACTTTTTGTCATCTGTTTTGTTCCAGCAATTCAGTGAG
Seq C2 exon
GTTAAAGGACTGGATGCATTTGTTCTGAGCCTGCTCACTCTAGATGGTGAATCAATCTACAGCCTGACCTCGAAGCCTATACTACTGTTATTAGCACGCATTATCCTAGTGAATGTAAGACATAAACTGACAGCTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018699_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTACAATTGCTACTGGAAGGGA
R:
GCTTCGAGGTCAGGCTGTAGA
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development