RnoEX0094704 @ rn6
Exon Skipping
Gene
ENSRNOG00000042932 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:RGD Symbol;Acc:1305264]
Coordinates
chr6:21870072-21879120:-
Coord C1 exon
chr6:21878943-21879120
Coord A exon
chr6:21874838-21874967
Coord C2 exon
chr6:21870072-21870212
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTACCATTCTTGTTTGTAGACA
3' ss Score
7.46
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
ATATTGGAGTTTTCTTAGAATTGCTGTTAGAAGGGAGCTATGAGGCCTTGTTCCTGCATTCAACAACACAGAATATTTTAAATTCAACAATGATGGCCGAAGAAAAGATTGACAGCTACCTGGAGAAGCAGATAGTGAATTTCCTGGATTGCTCTACGGATTTGGAAGAAATTGAAAG
Seq A exon
ACAGCAGCTGGTATTCCTACTTGGTGTGAGCAGCTTGCAGCTTTTTGTTCAGAGTAACTGGACTGGACCTCTTGTCGACTTGCACCCTCAGGATTTCTTGCCGTCTGTTCTGCTTGAGAAGTTCAGTGAG
Seq C2 exon
GTCAGAGGACTGGACGCTAGTATTATGGCCCTCCTCATTCTAGATGGTGAATCAGTCTACAGCCTCACTTCAAAGCCCATACTGCTGCTAATAGCACGCATTATCCTGGTGAACATCAGACATAAATTAACAGCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042932_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCTTGTTCCTGCATTCA
R:
TTCACCAGGATAATGCGTGCT
Band lengths:
250-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]