MmuEX0049490 @ mm10
Exon Skipping
Gene
ENSMUSG00000024078 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:MGI Symbol;Acc:MGI:1921446]
Coordinates
chr17:74718634-74724758:+
Coord C1 exon
chr17:74718634-74718811
Coord A exon
chr17:74721521-74721650
Coord C2 exon
chr17:74724618-74724758
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTACCATTCTTGTTTGTAGACA
3' ss Score
7.46
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
ATATTGGAGTTTTCTTAGAATTGCTGTTAGAAGGGAGCTATGAGGCTTTGTTCTTCCATTCAACGACACAAACTATTTTAAATTCAACAATGATGGCTGAAGAAAAGATTGACAGCTACCTGGAGAAGCAGATAGTGAATTTCCTGGATTGCTCTACAGATTTGGAAGAAATTGAAAG
Seq A exon
ACAGCAGCTGGTATTCCTACTTGGTGTGAGCAGCTTGCAGCTTTTTGTCCAGAGCAACTGGACTGGACCTCTTGTGGACTTGCATCCTCAGGATTTCTTGCCATCTGGTCTGCTGGAGCAATTCAGTGAG
Seq C2 exon
GTCAAAGGACTGGATGCTATTATTATGGGTCTCCTCATTCTAGATGGTGAATCAGTCTACAGCCTCACTTCAAAGCCCATACTGCTGCTAATAGCACGCATTATCCTAGTGAACATCAGACATAAATTGACAGCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024078-'1-6,'1-1,2-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAGAAGGGAGCTATGAGGCT
R:
AGCAGCAGTATGGGCTTTGAA
Band lengths:
243-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types