GgaEX1060966 @ galGal3
Exon Skipping
Gene
ENSGALG00000010538 | TTC27
Description
NA
Coordinates
chr3:32702026-32709862:-
Coord C1 exon
chr3:32709685-32709862
Coord A exon
chr3:32704547-32704676
Coord C2 exon
chr3:32702026-32702166
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTATCTATATTGCAGGCA
3' ss Score
9.33
5' ss Seq
GAGGTATAC
5' ss Score
6.64
Exon sequences
Seq C1 exon
AAAGTGGATCAGTGTTGCAGTTGATTTTTGATGGGAAATATGAGGCAATATTTTCAAATTCAACTATCCGGAATGTTTTCAGTGCATCTTCTGTGGCAGAGGAGGACATTGAAAGTTACTTGGAGAAGCAGATTCTAATGTACCTGGACTGTTCTACAGAGGTTGATAACATGGAAAG
Seq A exon
GCAGAGGCTGATGTTTCTACTCGGTGTGGGCAGTTTGCAGCTCTTCGTTCAAAGCAATTGGACTGGGCCTCCTGTTCATTTACAGCTGCAGGACTTTTTGCCATCTGCATTGTTACAGAAATGTTTTGAG
Seq C2 exon
CCAAAAATGCTGCATGCAACAATTCTGAAGATGTTGGTTCTAGATGCTGAATCAGTCTATACCTTGACTTCTCATCCTATCTTGCTGCTCATAGCTAGGGTAGTCCTTGTGAATTCAAGGCACAAACTCTCATCTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010538-'2-3,'2-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTGCATCTTCTGTGGCA
R:
CTGAAGAGATGAGAGTTTGTGCCT
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]