DreEX0081947 @ danRer10
Exon Skipping
Gene
ENSDARG00000007918 | ttc27
Description
tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]
Coordinates
chr17:22740290-22780728:+
Coord C1 exon
chr17:22740290-22740634
Coord A exon
chr17:22753744-22753873
Coord C2 exon
chr17:22780564-22780728
Length
130 bp
Sequences
Splice sites
3' ss Seq
TGATCTTTTGTGAACTGTAGGGA
3' ss Score
7.71
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCTGTTTATCAACAGTGAATTTACGTTGCGCTCATTTGCGCGTCTGGTCAAATCTCGACGCTCCCTTAGCGCTGGCTTATTAAGTATCCCATAATGCACCTCGTCGCTGTCATGGCTGCTCACTGATGACACTTGCGGCACATGGGCAGAAATCTAACACATTACAGTGAACACACGAACCTCAACACGAGTCTCACACTCACACAGAGAGCAGGTCCTGAGCGACGCGACGCTGTTTCATTCTCCGCGGAACCGGGCACACAAGGAGCGCGATGCTGCAGCTCGAGGCGGCGGTTCTGGGCGGATTGAGTCTGGACTGGAAACAGAGCAGCTTCAGCACCGCAG
Seq A exon
GGAAGTTGCTCTGTTGGCGGTGGCAGTGGGGTGTCTGAACCTTTTCGCCCAGAGTAACTGGACCGGCCCACCAGTTGAGCTCCATGTCTCTGATGTTCTTCCTGAAGCCCTGCTCCAGAACTTTTCTCAG
Seq C2 exon
TGTGTAAATGTGACGAGCTGTTCAGCAGTAATGCACACAGAAACCTGGCCATTCAGTTCCACCTGGAGTGCAGTTATATCTGCCTGACCTACTATGAGTATCACAAGGCCAAAGAACATCTGCAGACGGCTCGTGATCTGTCAGGACTCGATGTTAACATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007918_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACGAACCTCAACACGAGT
R:
CTCCAGGTGGAACTGAATGGC
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]