BtaEX0038130 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033010 | TTC27
Description
tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:HGNC:25986]
Coordinates
chr11:15295471-15321188:+
Coord C1 exon
chr11:15295471-15295566
Coord A exon
chr11:15298294-15298416
Coord C2 exon
chr11:15320961-15321188
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTGATTTTTCTAGCGC
3' ss Score
8.53
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCTCTTGCAGACCAATTTGAAGATAAGACTGCGTCTGTATTGGAACGTCTGAAGATTTTCTATTGCTGTCAAGTGCCACCTCATTGGGCCATTCAG
Seq A exon
CGCCAACTTGCAGGTTTACTCTTTGAGTTGGGATGTACCAATTCAGCCCTTCAGATATTTGAGAAGCTAGAAATGTGGGAAGATGTTGTCATTTGCTATGAAAGAGCTGGGCAGCATGGGAAG
Seq C2 exon
GCAGAAGAAATCCTGAGGCAAGAGCTGGAGAAAAAGGAAACGCCAAGTCTATACTGCTTGCTCGGAGATGTCCTTCGAGACCACTCTTACTATGACCAGGCCTGGGAGTTGTCTCGACACCGCAGTGCTCGAGCCCAGCGCTCCAAAGGCCTCCTCCACCTGCGAAGCAGGGAGTTCAAAGAATGCGTGGAGTGCTTCGAACGCTCTCTGAAGATTAATCCCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033010_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
PF132811=DUF4071=PU(29.0=75.6)
C2:
PF132811=DUF4071=PD(69.2=97.4),PF0051523=TPR_1=WD(100=44.7),PF134141=TPR_11=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCAAGTGCCACCTCATT
R:
TTCAGAGAGCGTTCGAAGCAC
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development