GgaEX1060969 @ galGal4
Exon Skipping
Gene
ENSGALG00000010538 | TTC27
Description
tetratricopeptide repeat protein 27 [Source:RefSeq peptide;Acc:NP_001012585]
Coordinates
chr3:30742164-30751163:-
Coord C1 exon
chr3:30751068-30751163
Coord A exon
chr3:30748813-30748935
Coord C2 exon
chr3:30742164-30742391
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGCATTTCTTATTTTTCCAGCGT
3' ss Score
6.9
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCACTTGCAGACCAATTTGAGGATGTAAATACTTCAGTATCTGAACGCATGAAGATTTTCTACTGTTGTCAGGTGCCTCCACATTGGGCCATACAG
Seq A exon
CGTCAGCTTGCAAGCTTACTCTTTGAGCTTGGGTGCACCAGCTCTGCCTTACAGATATATGAGGAGCTGGAAATGTGGGAAGATGCAGTAATCTGCTATGAAAGAGCAGGACAGCATGGGAAG
Seq C2 exon
GCAGAAGAAATATTGAGGCGAGAGCTAGAGAAGAAAGAAACACCAGTATTATATTGTTTGCTTGGTGATGTTCTCAAAGACCACCAATGCTATGACAAGGCCTGGGAGCTCTCCAGGCACCGCAGTGCCCGTGCACAACGCTCCAAAGGCCTCCTCCATCTCCGCAACCGGGAATTCAGGGAATGTGTAGAGTGCTTCGAACGCTCAGTGCAGATCAACCCTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010538_MULTIEX1-3/7=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0051523=TPR_1=WD(100=44.7),PF134141=TPR_11=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGTTGTCAGGTGCCTCCA
R:
GAGCGTTCGAAGCACTCTACA
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]