HsaEX0067883 @ hg38
Exon Skipping
Gene
ENSG00000018699 | TTC27
Description
tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:HGNC:25986]
Coordinates
chr2:32733828-32758519:+
Coord C1 exon
chr2:32733828-32733923
Coord A exon
chr2:32736694-32736816
Coord C2 exon
chr2:32758292-32758519
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTTACTTGATTTTTCTAGCGC
3' ss Score
7.34
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCTCTTGCAGACCAATTTGAAGATAAAACTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGTCAAGTACCACCTCACTGGGCCATTCAG
Seq A exon
CGCCAACTTGCAAGTTTGCTCTTTGAGTTGGGATGTACCAGTTCAGCCCTTCAGATATTTGAAAAGCTAGAAATGTGGGAAGATGTTGTCATTTGTTATGAAAGAGCCGGGCAGCACGGAAAG
Seq C2 exon
GCAGAAGAAATCCTTAGACAAGAGCTGGAGAAAAAAGAAACGCCTAGTTTATACTGCTTGCTTGGAGATGTCCTCGGAGACCATTCTTGCTATGACAAGGCCTGGGAGTTGTCCCGGTACCGCAGTGCTCGTGCTCAGCGCTCCAAAGCCCTCCTTCATCTTCGGAACAAGGAGTTTCAAGAGTGTGTAGAGTGCTTCGAACGCTCGGTTAAGATTAATCCCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018699-'33-48,'33-41,35-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF132811=DUF4071=FE(85.4=100),PF0051523=TPR_1=WD(100=44.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTACCACCTCACTGGGC
R:
TGGGATTAATCTTAACCGAGCGT
Band lengths:
251-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development