MmuEX0049501 @ mm9
Exon Skipping
Gene
ENSMUSG00000024078 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:MGI Symbol;Acc:MGI:1921446]
Coordinates
chr17:75176984-75198751:+
Coord C1 exon
chr17:75176984-75177079
Coord A exon
chr17:75180123-75180245
Coord C2 exon
chr17:75198524-75198751
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACTCGCTCCTGTTTTTCCAGCGC
3' ss Score
8.81
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GCTCTTGCAGACCAATTCGAAGATAAAGCCACATCTGTACTGGAACGTCTGAAGATTTTCTATTGTTGTCAAGTACCCCCTCACTGGGCTGTTCAG
Seq A exon
CGCCAGCTCGCAGGTTTGCTGTTTGAGTTGGGATGCACCTCCTCAGCCCTGCAGATATTTGAGAAGCTGGAGATGTGGGAGGATGTGGTCATCTGCCACGAGAGGGCTGGGCGGCACGGGAAG
Seq C2 exon
GCAGAAGAAATACTTAGGCAAGAACTGGAGAAAAAGGAAACACCAGGTTTATATTGCTTACTTGGAGATGTCCTGCAGGACCATTCCTGCTACGACAAGGCCTGGGAGCTGTCCCGGCATCGCAGTGCACGTGCCCAGCGCTCCAAAGCTCTCCTCCATCTTCGGAACAAGGAGTTTCGGGAATGTGTGGAGTGCTTCGAGCGCTCAGTGAAGATCAATCCCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024078_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
PF132811=DUF4071=PU(31.5=68.3)
C2:
PF132811=DUF4071=PD(66.3=77.6),PF0051523=TPR_1=WD(100=44.7),PF134141=TPR_11=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAGTACCCCCTCACTGG
R:
TTGATCTTCACTGAGCGCTCG
Band lengths:
248-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: